Pysam 0.22.0-GCC-12.3.0
There is a newer install of Pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.Accessing Pysam 0.22.0-GCC-12.3.0
To load the module for Pysam 0.22.0-GCC-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load Pysam/0.22.0-GCC-12.3.0
BEAR Apps Version
Architectures
EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the Pysam website.
Dependencies
This version of Pysam has a direct dependency on: cURL/8.0.1-GCCcore-12.3.0 GCC/12.3.0 ncurses/6.4-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 Python-bundle-PyPI/2023.06-GCCcore-12.3.0 XZ/5.4.2-GCCcore-12.3.0
Required By
This version of Pysam is a direct dependent of: BlobTools/1.1.1-foss-2023a CMSeq/1.0.4-foss-2023a figeno/1.6.6-foss-2023a junctionCounts/1.0.0-20240207-foss-2023a MetaPhlAn/4.1.1-foss-2023a modbamtools/0.4.8-gfbf-2023a nanoget/1.19.3-foss-2023a NanoPlot/1.43.0-foss-2023a
Other Versions
These versions of Pysam are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 8th November 2024